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30-AUGUST-2008 03:13:07 - microbiology Food microbiology is the study of the microorganisms which inhabit, create or contaminate food. Of major importance is the study of microorganisms causing food spoilage.1 However good bacteria such as probiotics are becoming increasingly important in food science.2 In addition, microorganisms are essential for the production of foods such as cheese, yoghurt, other fermented foods, bread, beer and wine. Contents 1 Food safety 2 Fermentation 3 Microbial Biopolymers 3.1 Xanthan 3.2 Alginate 3.3 Cellulose 3.4 Poly-γ-glutamic acid 3.5 Levan 3.6 Exopolysaccharides 4 Foodborne pathogens 4.1 Enteric Viruses 4.2 Protozoan Parasites 4.3 Mycotoxins 4.4 Yersinia enterocolitica 4.5 Vibrio 4.6 Staphylococcus aureus 4.7 Campylobacter 4.8 Listeria monocytogenes 4.9 Salmonella 4.10 Shigella 4.11 Escherichia coli 4.12 Clostridium botulinum and Clostridium perfringens 4.13 Bacillus cereus 5 See also 6 References 7 External links Food safety Food safety is a major focus of food microbiology. Pathogenic bacteria, viruses and toxins produced by microorganisms are all possible contaminants of food. However, microorganisms and their products can also be used to combat these pathogenic microbes. Probiotic bacteria, including those which produce bacteriocins can kill and inhibit pathogens. Alternatively, purified bacteriocins such as nisin can be added directly to food products. Finally, bacteriophage, viruses which only infect bacteria, can be used to kill bacterial pathogens. Thorough preparation of food, including proper cooking will eliminate most bacteria and viruses. However, toxins produced by contaminants may not be heat-labile, and some will not be eliminated by cooking. Fermentation Fermentation is one way microorganisms can change a food. Yeast, especially S. cerevisiae, is used to leaven bread, brew beer and make wine. Certain bacteria, including lactic acid bacteria, are used to make yogurt, cheese, hot sauce, pickles and dishes such as kimchi. A common effect of these fermentations is that the food product is less hospitable to other microorganisms, including pathogens and spoilage-causing microorganisms, thus extending the food's shelf-life. Some cheese varieties also require mold microorganisms to ripen and develop their characteristic flavors. Microbial Biopolymers A variety of biopolymers, such as polysaccharides, polyesters and polyamides, are naturally produced by microorganisms. Several microbially-produced polymers are used in the food industry.3 Xanthan Plant-pathogenic bacteria of the genus Xanthomonas are able to produce the acidic exopolysaccharide xanthan gum. Because of its physical properties, it is widely used as a viscosifer, thickener, emulsifier or stabilizer in the food industry. Xanthan consists of pentasaccharide repeat units composed of D-glucosyl, D-mannosyl, and D-glucuronyl acid residues in a molar ratio of 2:2:1 and variable proportions of O-acetyl and pyruvyl residues.4 Alginate Alginate is the main representative of a family of polysaccharides that neither show branching nor repeating blocks or unit patterns and this property distinguishes it from to other polymers like xanthan or dextran. Alginates can be used as thickening agents.5 Cellulose Cellulose is a simple polysaccharide, in that it consists only of one type of sugar glucose, and the units are linearly arranged and linked together by β-1,4 linkages only. The mechanism of biosynthesis is however rather complex, partly because in native celluloses the chains are organized as highly ordered water-insoluble fibers. Currently the key genes involved in cellulose biosynthesis and regulation are known in a number of bacteria, but many details of the biochemistry of its biosynthesis are still not clear. In spite of the enormous abundance of cellulose in plants bacterial celluloses are being investigated for industrial exploitations.6 Poly-γ-glutamic acid Poly-γ-glutamic acid γ-PGA produced by various strains of Bacillus has potential applications as a thickener in the food industry.7 Levan Levan, a homopolysaccharide which is composed of D-fructofuranosyl residues joined by 2,6 with multiple branches by 2,1 linkages has great potential as a functional biopolymer in foods, feeds, cosmetics, and the pharmaceutical and chemical industries. Levan can be used as food or a feed additive with prebiotic and hypocholesterolemic effects.8 Exopolysaccharides Microorganisms synthesize a wide spectrum of multifunctional polysaccharides including intracellular polysaccharides, structural polysaccharides and extracellular polysaccharides or exopolysaccharides EPS. Exopolysaccharides generally constitute of monosaccharides and some non-carbohydrate substituents such as acetate, pyruvate, succinate, and phosphate. Owing to the wide diversity in composition, exopolysaccharides have found multifarious applications in various food and pharmaceutical industries.9 Foodborne pathogens Foodborne pathogens are the leading causes of illness and death in less developed countries killing approximately 1.8 million people annually. In developed countries foodborne pathogens are responsible for millions of cases of infectious gastrointestinal diseases each year, costing billions of dollars in medical care and lost productivity. New foodborne pathogens and foodborne diseases are likely to emerge driven by factors such as pathogen evolution, changes in agricultural and food manufacturing practices, and changes to the human host status. There are growing concerns that terrorists could use pathogens to contaminate food and water supplies in attempts to incapacitate thousands of people and disrupt economic growth.1 Enteric Viruses Food and waterborne viruses contribute to a substantial number of illnesses throughout the world. Among those most commonly known are hepatitis A virus, rotavirus, astrovirus, enteric adenovirus, hepatitis E virus, and the human caliciviruses consisting of the noroviruses and the Sapporo viruses. This diverse group are transmitted by the fecal-oral route, often by ingestion of contaminated food and water.10 Protozoan Parasites Protozoan parasites associated with food and water can cause illness in humans. Although parasites are more commonly found in developing countries, developed countries have also experienced several foodborne outbreaks. Contaminants may be inadvertently introduced to the foods by inadequate handling practices, either on the farm or during processing of foods. Protozoan parasites can be found worldwide, either infecting wild animals or in water and contaminating crops grown for human consumption. The disease can be much more severe and prolonged in immunocompromissed individuals.11 Mycotoxins Molds produce mycotoxins, which are secondary metabolites that can cause acute or chronic diseases in humans when ingested from contaminated foods. Potential diseases include cancers and tumors in different organs heart, liver, kidney, nerves, gastrointestinal disturbances, alteration of the immune system, and reproductive problems. Species of Aspergillus, Fusarium, Penicillium, and Claviceps grow in agricultural commodities or foods and produce the mycotoxins such as aflatoxins, deoxynivalenol, ochratoxin A, fumonisins, ergot alkaloids, T-2 toxin, and zearalenone and other minor mycotoxins such as cyclopiazonic acid and patulin. Mycotoxins occur mainly in cereal grains barley, maize, rye, wheat, coffee, dairy products, fruits, nuts and spices. Control of mycotoxins in foods has focused on minimizing mycotoxin production in the field, during storage or destruction once produced. Monitoring foods for mycotoxins is important to manage strategies such as regulations and guidelines, which are used by 77 countries, and for developing exposure assessments essential for accurate risk characterization.12 Yersinia enterocolitica Yersinia enterocolitica includes pathogens and environmental strains that are ubiquitous in terrestrial and fresh water ecosystems. Evidence from large outbreaks of yersiniosis and from epidemiological studies of sporadic cases has shown that Y. enterocolitica is a foodborne pathogen. Pork is often implicated as the source of infection. The pig is the only animal consumed by man that regularly harbours pathogenic Y. enterocolitica. An important property of the bacterium is its ability to multiply at temperatures near to 0°C, and therefore in many chilled foods. The pathogenic serovars mainly O:3, O:5,27, O:8 and O:9 show different geographical distribution. However, the appearance of strains of serovars O:3 and O:9 in Europe, Japan in the 1970s, and in North America by the end of the 1980s, is an example of a global pandemic. There is a possible risk of reactive arthritis following infection with Y. enterocolitica.13 Vibrio Vibrio species are prevalent in estuarine and marine environments and seven species can cause foodborne infections associated with seafood. Vibrio cholerae O1 and O139 serovtypes produce cholera toxin and are agents of cholera. However, fecal-oral route infections in the terrestrial environment are responsible for epidemic cholera. V. cholerae non-O1/O139 strains may cause gastroenteritis through production of known toxins or unknown mechanism. Vibrio parahaemolytitucs strains capable of producing thermostable direct hemolysin TDH and/or TDH-related hemolysin are most important cause of gastroenteritis associated with seafood consumption. Vibrio vulnificus is responsible for seafoodborne primary septicemia and its infectivity depends primarily on the risk factors of the host. V. vulnificus infection has the highest case fatality rate 50% of any foodborne pathogen. Four other species Vibrio mimicus, Vibrio hollisae, Vibrio fluvialis, and Vibrio furnissii can cause gastroenteritis. Some strains of these species produce known toxins but the pathogenic mechanism is largely not understood. The ecology of and detection and control methods for all seafoodborne Vibrio pathogens are essentially similar.14 Staphylococcus aureus Staphylococcus aureus is a common cause of bacterial foodborne disease worldwide. Symptoms include vomiting and diarrhea that occur shortly after ingestion of S. aureus-contaminated food. The symptoms arise from ingestion of preformed enterotoxin, which accounts for the short incubation time. Staphylococcal enterotoxins are superantigens and, as such, have adverse effects on the immune system. The enterotoxin genes are accessory genetic elements in S. aureus, meaning that not all strains of this organism are enterotoxin-producing. The enterotoxin genes are found on prophage, plasmids, and pathogenicity islands in different strains of S. aureus. Expression of the enterotoxin genes is often under the control of global virulence gene regulatory systems.15 Campylobacter Campylobacter spp., primarily C. jejuni subsp. jejuni is one of the major causes of bacterial gastroenteritis in the U.S. and worldwide. Campylobacter infection is primarily a foodborne illness, usually without complications; however, serious sequelae such as Guillain-Barre Syndrome occur in a small subset of infected patients. Detection of C. jejuni in clinical samples is readily accomplished by culture and non-culture methods.16 Listeria monocytogenes Listeria monocytogenes is Gram-positive foodborne bacterial pathogen and the causative agent of human listeriosis. Listeriae are acquired primarily through the consumption of contaminated foods including soft cheese, raw milk, deli salads, and ready-to-eat foods such as luncheon meats and frankfurters. Although L. monocytogenes infection is usually limited to individuals that are immunocompromised, the high mortality rate associated with human listeriosis makes L. monocytogenes the leading cause of death amongst foodborne bacterial pathogens. As a result, tremendous effort has been made at developing methods for the isolation, detection and control of L. monocytogenes in foods.17 Salmonella Salmonella serotypes continue to be a prominent threat to food safety worldwide. Infections are commonly acquired by animal to human transmission though consumption of undercooked food products derived from livestock or domestic fowl. The second half of the 20th century saw the emergence of Salmonella serotypes that became associated with new food sources i.e. chicken eggs and the emergence of Salmonella serotypes with resistance against multiple antibiotics.18 Shigella Shigella species are members of the family Enterobacteriaceae and are Gram negative, non-motile rods. Four subgroups exist based on O-antigen structure and biochemical properties; S. dysenteriae subgroup A, S. flexneri subgroup B, S. boydii subgroup C and S. sonnei subgroup D. Symptoms include mild to severe diarrhea with or without blood, fever, tenesmus, and abdominal pain. Further complications of the disease may be seizures, toxic megacolon, reactive arthritis and hemolytic uremic syndrome. Transmission of the pathogen is by the fecal-oral route, commonly through food and water. The infectious dose ranges from 10-100 organisms. Shigella spp. have a sophisticated pathogenic mechanism to invade colonic epithelial cells of the host, man and higher primates, and the ability to multiply intracellularly and spread from cell to adjacent cell via actin polymerization. Shigellae are one of the leading causes of bacterial foodborne illnesses and can spread quickly within a population.19 Escherichia coli More information is available concerning Escherichia coli than any other organism, thus making E. coli the most thoroughly studied species in the microbial world. For many years, E. coli was considered a commensal of human and animal intestinal tracts with low virulence potential. It is now known that many strains of E. coli act as pathogens inducing serious gastrointestinal diseases and even death in humans. There are six major categories of E. coli strains that cause enteric diseases in humans including the 1 enterohemorrhagic E. coli, which cause hemorrhagic colitis and hemolytic uremic syndrome, 2 enterotoxigenic E. coli, which induce traveler's diarrhea, 3 enteropathogenic E. coli, which cause a persistent diarrhea in children living in developing countries, 4 enteroaggregative E. coli, which provoke diarrhea in children, 5 enteroinvasive E. coli that are biochemically and genetically related to Shigella species and can induce diarrhea, and 6 diffusely adherent E. coli, which cause diarrhea and are distinguished by a characteristic type of adherence to mammalian cells.20 Clostridium botulinum and Clostridium perfringens Clostridium botulinum produces extremely potent neurotoxins that result in the severe neuroparalytic disease, botulism. The enterotoxin produced by C. perfringens during sporulation of vegetative cells in the host intestine results in debilitating acute diarrhea and abdominal pain. Sales of refrigerated, processed foods of extended durability including sous-vide foods, chilled ready-to-eat meals, and cook-chill foods have increased over recent years. Anaerobic spore-formers have been identified as the primary microbiological concerns in these foods. Heightened awareness over intentional food source tampering with botulinum neurotoxin has arisen with respect to genes encoding the toxins that are capable of transfer to nontoxigenic clostridia.21 Bacillus cereus The Bacillus cereus group comprises six members: B. anthracis, B. cereus, B. mycoides, B. pseudomycoides, B. thuringiensis and B. weihenstephanensis. These species are closely related and should be placed within one species, except for B. anthracis that possesses specific large virulence plasmids. B. cereus is a normal soil inhabitant and is frequently isolated from a variety of foods, including vegetables, dairy products and meat. It causes a vomiting or diarrhoea illness that is becoming increasingly important in the industrialized world. Some patients may experience both types of illness simultaneously. The diarrhoeal type of illness is most prevalent in the western hemisphere, whereas the emetic type is most prevalent in Japan. Desserts, meat dishes, and dairy products are the foods most frequently associated with diarrhoeal illness, whereas rice and pasta are the most common vehicles of emetic illness. The emetic toxin cereulide has been isolated and characterized; it is a small ring peptide synthesised non-ribosomally by a peptide synthetase. Three types of B. cereus enterotoxins involved in foodborne outbreaks have been identified. Two of these enterotoxins are three-component proteins and are related, while the last is a one-component protein CytK. Deaths have been recorded both by strains that produce the emetic toxin and by a strain producing only CytK. Some strains of the B. cereus group are able to grow at refrigeration temperatures. These variants raise concern about the safety of cooked, refrigerated foods with an extended shelf life. B. cereus spores adhere to many surfaces and survive normal washing and disinfection except for hypochlorite and UVC procedures. B. cereus foodborne illness is likely underreported because of its relatively mild symptoms, which are of short duration.22 See also Environmental microbiology Industrial microbiology Microbiology Bacillus Clostridium Escherichia coli Shigella Salmonella Salmonella Listeria Campylobacter Staphylococcus Vibrio Yersinia References ^ a b Fratamico PM and Bayles DO or. 2005. Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Tannock GW or. 2005. Probiotics and Prebiotics: Scientific Aspects. Caister Academic Press. ISBN 978-1-904455-01-1. ^ Rehm BHA or. 2009. Microbial Production of Biopolymers and Polymer Precursors: Applications and Perspectives. Caister Academic Press. ISBN 978-1-904455-36-3. ^ Becker and Vorholter 2009. Xanthan Biosynthesis by Xanthomonas Bacteria: An Overview of the Current Biochemical and Genomic Data, Microbial Production of Biopolymers and Polymer Precursors. Caister Academic Press. ISBN 978-1-904455-36-3. ^ Remminghorst and Rehm 2009. Microbial Production of Alginate: Biosynthesis and Applications, Microbial Production of Biopolymers and Polymer Precursors. Caister Academic Press. ISBN 978-1-904455-36-3. ^ Valla et al 2009. Bacterial Cellulose Production: Biosynthesis and Applications, Microbial Production of Biopolymers and Polymer Precursors. Caister Academic Press. ISBN 978-1-904455-36-3. ^ Shih and Wu 2009. Biosynthesis and Application of Polygamma-glutamic acid, Microbial Production of Biopolymers and Polymer Precursors. Caister Academic Press. ISBN 978-1-904455-36-3. ^ Kang et al 2009. Levan: Applications and Perspectives, Microbial Production of Biopolymers and Polymer Precursors. Caister Academic Press. ISBN 978-1-904455-36-3. ^ Suresh and Mody 2009. Microbial Exopolysaccharides: Variety and Potential Applications, Microbial Production of Biopolymers and Polymer Precursors. Caister Academic Press. ISBN 978-1-904455-36-3. ^ Richards GP 2005. Food- and Waterborne Enteric Viruses, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Ortega Y 2005. Food-and Waterborne Protozoan Parasites, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Cousin et al 2005. Foodborne Mycotoxins: Chemistry, Biology, Ecology, and Toxicology, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Nesbakken T 2005. Yersinia enterocolitica, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Nishibuchi M 2005. Vibrio spp., Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Stewart GC 2005. Staphylococcus aureus, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Nachamkin I and Guerry P 2005. Campylobacter Infections, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Paoli et al 2005. Listeria monocytogenes, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Andrews et al 2005. Salmonella spp., Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Lampel KA 2005. Shigella spp., Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Smith and Fratamico 2005. Diarrhea-inducing Escherichia coli, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Novak et al 2005. Clostridium botulinum and Clostridium perfringens, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. ^ Granum PE 2005. Bacillus cereus, Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-00-4. External links Institute of Food Technologists Food Microbiology Division Food Microbiology Glossary Microbiology Food portal v d e Food science Allergy · Chemistry · Engineering · Law · Microbiology · Packaging · Processing · Quality · Foodservice catering · Technology · Nutrition · Product development · Sensory analysis discrimination testing · Superfood Retrieved from http://en..org/wiki/Food_microbiology Categories: Microbiology | Virology | Water-borne diseases | Food safety | Foodborne illnesses | Infectious diseases Views Article Discussion this page History Personal tools Log in / create account Navigation Main page Contents Featured content Current events Random article Search Go Search Interaction Community portal Recent changes Contact Donate to Help Toolbox What links here Related changes Upload file Special pages Printable version Permanent link Cite this page This page was last modified on 18 August 2008, at 09
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